STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0536Probable short-chain dehydrogenase transmembrane protein. (470 aa)    
Predicted Functional Partners:
RSc0535
Hypothetical signal peptide protein.
 
  0.958
fabF1
Probable 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
  0.934
fabF2
Putative 3-oxoacyl-[acyl-carrier-protein] synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
  0.934
fabH
Probable 3-oxoacyl-[acyl-carrier-protein] synthase III (beta-ketoacyl-acp synthase III) (kas III); Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids.; Belongs to the [...]
 
 
 0.930
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.
 
 
 0.929
RSc0537
Putative transmembrane acyl-coa dehydrogenase oxidoreductase protein.
  
  0.781
fabB
Probable 3-oxoacyl-[acyl-carrier-protein] synthase i; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
  0.773
RSc2103
Probable amino-acid-binding periplasmic (pbp) abc transporter protein; Belongs to the bacterial solute-binding protein 3 family.
    
 
 0.770
RSc2257
Probable amino-acid-binding periplasmic abc transporter protein; Belongs to the bacterial solute-binding protein 3 family.
    
 
 0.770
RSp0186
Probable bacterial extracellular solute-binding, family 3; abc transporter protein.
    
 
 0.770
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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