STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0545Probable oxidoreductase protein. (398 aa)    
Predicted Functional Partners:
RSc2920
Putative hydroxamate-type ferrisiderophore receptor signal peptide protein.
   
  
 0.849
RSc0544
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.718
RSc0626
Probable aldehyde dehydrogenase (subunit III) oxidoreductase protein.
  
  
 0.704
iorA2
Probable isoquinoline 1-oxidoreductase (alpha subunit) oxidoreductase protein.
  
  
 0.704
RSc2041
Urea transport system substrate-binding protein; Probable abc-type branched-chain amino acid transport systems, periplasmic component harboring a twin-arginine translocation pathway signal; abc transporter protein.
   
  
 0.704
RSp0324
Probable dehydrogenase, small chain oxidoreductase protein.
  
  
 0.704
RSp0911
Putative salicylate hydroxylase oxidoreductase protein.
  
     0.684
RSp0709
Putative cytochrome p-450-like monooxygenase oxidoreductase protein; Belongs to the cytochrome P450 family.
 
 
 0.517
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.432
ubiG
Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
   
 0.429
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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