STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0559Putative lipida core-o-antigen ligase transmembrane protein. (569 aa)    
Predicted Functional Partners:
RSc0686
Putative lipopolysaccharide o-side chain biosynthesis transmembrane protein.
 
  
 0.762
RSc1397
Probable transmembrane protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.735
RSc1523
Probable transmembrane protein.
  
     0.715
pilA
Type 4 fimbrial pilin signal peptide protein; Belongs to the N-Me-Phe pilin family.
 
   
 0.641
RSc1033
Probable na+/h+ antiporter nhad and related arsenite permeases transmembrane protein.
  
    0.636
RSp1004
Probable dtdp-glucose 4,6-dehydratase transmembrane protein.
  
  
 0.614
RSc3094
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.606
RSp1008
Probable glycosyl transferase transmembrane protein.
  
  
 0.580
epsA
epsIpolysaccharide export outer membrane epsa precursor. transmembrane protein; Probably involved in polymerization and/or export of exopolysaccharide EPS I which functions as a virulence factor. Belongs to the BexD/CtrA/VexA family.
  
  
 0.578
rnpA
Probable ribonuclease p protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
 
    0.563
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.