STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0561Probable zinc metallopeptidase signal peptide protein. (561 aa)    
Predicted Functional Partners:
moaC
Probable molybdenum cofactor biosynthesis protein c; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP).; Belongs to the MoaC family.
       0.688
lptD
Probable organic solvent tolerance transmembrane protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
  
 0.543
RSc0695
Probable porin (omp) abc transporter protein.
  
    0.520
RSc1206
Probable lipoprotein.
 
 
   0.501
RSc0249
Putative calcium binding hemolysin protein.
   
 
 0.451
RSc0352
Probable peptidase transmembrane protein; Belongs to the peptidase S41A family.
  
 
 0.450
ragC
Probable outer membrane lipoprotein.
   
 
 0.448
RSc3094
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.439
RSc1222
Putative membrane protease subunits, stomatin/prohibitin homologs transmembrane protein; HflC and HflK could encode or regulate a protease.
  
     0.435
RSc0398
Hypothetical transmembrane protein.
  
     0.424
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.