STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0562Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (195 aa)    
Predicted Functional Partners:
RSc0563
Probable hydrolase protein.
       0.840
RSc0564
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.734
sdhE
Conserved hypothetical protein; An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH and other flavinylated proteins as well.
  
     0.701
RSc1135
Putative hydrolase or acyltransferase (alpha/beta hydrolase superfamily) protein.
  
     0.687
RSp0335
Putative hns-like transcription regulator protein.
  
     0.672
RSp0029
Putative hns-like transcription regulator protein.
  
     0.665
RSc0867
Putative hns-like transcription regulator protein.
  
     0.657
phaP1
Probable polyhydroxybutyrate granule-associated protein (phasin) phap1.
  
     0.647
RSc1256
Putative molybdopterin binding domain-harboring protein.
  
     0.641
rfaF
Probable adp-heptose--lipopolysaccharide heptosyltransferase II protein.
       0.629
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.