Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0587Hypothetical transmembrane protein. (286 aa)    
Predicted Functional Partners:
RSc0604
Probable hydrolase oxidoreductase protein; Serine hydrolase involved in the detoxification of formaldehyde.
  
 
 0.787
RSc0586
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.714
RSp0553
Hypothetical protein of unknown function duf156.
  
  
 0.708
gbd1
Probable nad-dependent 4-hydroxybutyrate dehydrogenase oxidoreductase protein.
    
 
 0.507
gbd2
Putative nad-dependent 4-hyddoxybutyrate dehydrogenase oxidoreductase protein.
    
 
 0.507
tadA
Putative cytosine/adenosine deaminase protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.479
RSc0585
Putative transport transmembrane protein.
       0.422
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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