STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
avrAType III effector protein avra. (230 aa)    
Predicted Functional Partners:
popP1
Type III effector protein popp1.
      
 0.783
popP2
Type III effector protein popp2.
      
 0.783
ripB
Type III effector ripb protein.
      
 0.734
RSc0321
Putative type III effector protein.
      
 0.533
ripA
Type III effector protein awr1.
      
 0.532
RSp0842
Putative leucine-rich-repeat type III effector protein.
      
 0.530
popF2
Secreted protein popf2.
      
 0.475
RSc0609
Putative lipoprotein.
       0.441
RSc0610
Putative signal peptide protein.
       0.421
RSc0611
Probable abpe family transmembrane protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
       0.421
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.