STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
avrAType III effector protein avra. (230 aa)    
Predicted Functional Partners:
popP1
Type III effector protein popp1.
      
 0.830
popP2
Type III effector protein popp2.
      
 0.830
ripB
Type III effector ripb protein.
      
 0.811
RSp0081
Putative gcn5-related n-acetyltransferase protein.
      
 0.635
RSc0321
Putative type III effector protein.
      
 0.549
ripA
Type III effector protein awr1.
      
 0.549
RSp0842
Putative leucine-rich-repeat type III effector protein.
      
 0.547
popF2
Secreted protein popf2.
      
 0.542
RSc0609
Putative lipoprotein.
       0.441
RSc0610
Putative signal peptide protein.
       0.421
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.