STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0624Probable zinc-dependent alcohol dehydrogenase oxidoreductase protein. (338 aa)    
Predicted Functional Partners:
RSp0430
Probable alcohol dehydrogenase (adh-ht) oxidoreductase protein.
 
 0.505
RSc1806
Probable polyketide synthase protein.
  
  
 0.497
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.496
fruB
Probable multiphosphoryl transfer protein mtp.
     
 0.494
RSp0625
Probable magnesium chelatase (subunits dI protein.
   
  
 0.472
RSc0181
Probable pseudogene (alcohol dehydrogenase n-terminal fragment) protein.
   
 0.451
RSc0625
Probable transcription regulator protein.
       0.451
bioF
Probable 8-amino-7-oxononanoate synthase protein; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.
  
  
 0.432
kbl
Probable 2-amino-3-ketobutyrate coenzyme a ligase protein; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
  
  
 0.432
RSc0636
Probable truncated oxidoreductase (n-terminal part) protein.
 
   
 0.412
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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