STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0638Probable truncated oxidoreductase (c-terminal part) protein. (174 aa)    
Predicted Functional Partners:
RSc0636
Probable truncated oxidoreductase (n-terminal part) protein.
     0.987
RSc1806
Probable polyketide synthase protein.
  
 
 0.901
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.900
RSc1810
Probable polyketide synthase protein.
  
 
 0.641
tISRso5-3
Isrso5-transposase protein.
  
    0.563
RSp1422
Putative peptide synthetase protein.
  
  
 0.561
RSp0844
Putative nucleoside-diphosphate-sugar epimerase protein.
 
 
 0.428
icmF
Putative methylmalonyl-coa mutase protein; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
     
 0.405
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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