STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaF1Probable secretion atpase protein. (453 aa)    
Predicted Functional Partners:
tadB1
Probable pilus assembly tadb transmembrane protein.
 
  
 0.975
tadC1
Probable pilus assembly tadc transmembrane protein.
 
  
 0.954
cpaE1
Putative pilus assembly protein.
 
  
 0.949
tadG1
Probable pilus assembly tadg transmembrane protein.
 
  
 0.942
cpaC1
Probable pilus assembly protein, secretin cpac; Belongs to the bacterial secretin family.
 
  
 0.929
cpaB1
Probable pilus assembly cpab transmembrane protein.
 
  
 0.901
tadB2
Probable pilus assembly tadb transmembrane protein.
 
  
 0.899
tadC2
Probable pilus assembly tadc transmembrane protein.
 
  
 0.883
cpaC2
Probable pilus assembly, secretin cpac signal peptide protein; Belongs to the bacterial secretin family.
  
 0.882
RSc0648
Putative transmembrane protein.
 
  
 0.879
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.