STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0660Putative pilin transmembrane protein. (53 aa)    
Predicted Functional Partners:
RSc0661
Putative pilin transmembrane protein.
    
 
0.959
RSc0658
Putative pilin transmembrane protein.
    
 
0.934
RSp1092
Putative pilin protein.
     
  0.900
cpaB1
Probable pilus assembly cpab transmembrane protein.
  
  
 0.581
cpaE1
Putative pilus assembly protein.
  
  
 0.561
RSc0659
Putative pilin protein.
      
0.559
cpaA1
Probable prepilin peptidase transmembrane protein.
  
  
 0.554
cpaE2
Probable pilus assembly protein.
  
  
 0.497
RSp1088
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
  
 0.495
cpaB2
Probable flp pilus assembly cpab; signal peptide protein.
  
  
 0.495
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.