STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0661Putative pilin transmembrane protein. (53 aa)    
Predicted Functional Partners:
RSc0660
Putative pilin transmembrane protein.
      
0.610
cpaA1
Probable prepilin peptidase transmembrane protein.
  
  
 0.547
cpaB1
Probable pilus assembly cpab transmembrane protein.
  
  
 0.545
cpaE1
Putative pilus assembly protein.
  
  
 0.532
cpaE2
Probable pilus assembly protein.
  
  
 0.468
RSp1088
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
  
 0.463
cpaB2
Probable flp pilus assembly cpab; signal peptide protein.
  
  
 0.463
RSc0659
Putative pilin protein.
      
0.451
cpaA2
Probable prepilin peptidase transmembrane protein.
  
  
 0.413
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.