STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0667Probable rubredoxin protein. (60 aa)    
Predicted Functional Partners:
RSp1220
Probable flavoprotein fad oxidoreductase.
 
 
 0.876
nirB
Probable nitrite reductase nadph (large subunit) oxidoreductase protein; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.851
pilI
Putative twitching motility protein.
     
 0.777
pilH
Putative twitching motility two-component response regulator transcription regulator protein.
     
 0.699
RSc0673
Hypothetical protein; Miscellaneous; unknown.
     
 0.685
hemL
Probable glutamate-1-semialdehyde 2,1-aminomutase protein.
     
 0.651
pilG
Probable twitching motility two-component response regulator transcription regulator protein.
     
 0.635
RSc0675
Cog1678, putative transcriptional regulator protein; Belongs to the UPF0301 (AlgH) family.
  
    0.589
alkK
Probable acyl-coa synthetase protein.
      
 0.548
RSc0676
Putative holliday junction resolvase protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
    0.474
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.