STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0673Hypothetical protein; Miscellaneous; unknown. (96 aa)    
Predicted Functional Partners:
pilI
Putative twitching motility protein.
     
 0.756
pilJ
Putative twitching motility transmembrane protein.
     
 0.730
RSc0672
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator); Putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein.
       0.723
RSc0667
Probable rubredoxin protein.
     
 0.685
pilG
Probable twitching motility two-component response regulator transcription regulator protein.
     
 0.638
pilH
Putative twitching motility two-component response regulator transcription regulator protein.
     
 0.561
rsuA
Probable ribosomal small subunit pseudouridine synthase a protein; Belongs to the pseudouridine synthase RsuA family.
       0.526
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.