STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0698Putative transcription regulator protein. (264 aa)    
Predicted Functional Partners:
RSp0815
Probable transcription regulator protein.
  
     0.688
pcm
Probable protein-l-isoaspartate o-methyltransferase.
   
   0.591
RSc1259
Putative signal peptide protein.
  
     0.584
RSc0696
Putative rhodanese-related sulfurtransferase protein.
       0.508
RSc0699
Hypothetical of unknown function upf0153; oxidoreductase protein.
       0.488
RSc0700
Probable transmembrane protein.
       0.488
RSc1062
Probable transmembrane protein.
  
     0.474
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.414
RSc0695
Probable porin (omp) abc transporter protein.
     
 0.412
bacA
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
  
  
 0.405
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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