STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0739Probable transmembrane protein. (371 aa)    
Predicted Functional Partners:
RSc3259
Hypothetical transmembrane protein.
 
   
 0.795
RSc3258
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
   
 0.788
RSc3253
Probable sulfur oxidation signal peptide protein; Belongs to the 5'-nucleotidase family.
 
     0.775
RSc3256
Putative cytochrome c-related protein.
 
     0.772
RSc3255
Putative cytochrome c transmembrane protein.
 
     0.755
queC
Hypothetical signal peptide protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
       0.753
soxF
Probable sulfide dehydrogenase flavocytochrome c oxidoreductase protein.
 
     0.753
RSc3263
Putative cytochrome c signal peptide protein.
 
     0.699
RSc3257
Hypothetical signal peptide protein.
 
   
 0.684
cpoB
Probable transmembrane protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
     0.581
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.