STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0744Putative dna/rna non-specific endonuclease protein. (275 aa)    
Predicted Functional Partners:
RSc2452
Putative phospholipase d/transphosphatidylase; protein.
      
 0.796
RSc2162
Probable cog1234, metal-dependent hydrolases of the beta-lactamase superfamily III protein.
   
   0.762
RSc2495
Probable arylsulfatase precursor (aryl-sulfate sulphohydrolase) protein.
   
   0.762
RSp1603
Putative calcium-binding ef-hand hnh nuclease protein.
      
 0.637
polA
Probable dna polymeraseIprotein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.610
nuoF
Probable nadh dehydrogenaseI(chain f) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
    0.604
RSc0745
Putative cog3613, nucleoside 2-deoxyribosyltransferase protein.
       0.559
RSc0474
Putative 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
   
  
 0.445
RSc1759
3-hydroxyacyl-CoA dehydrogenase; Probable trifunctonal: enoyl-coa hydratase and delta3-cis-delta2-trans-enoyl-coa isomerase and 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
   
  
 0.445
RSc1542
Putative uncharacterized nad(fad)-dependent dehydrogenase transmembrane protein.
   
 
 0.439
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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