STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0745Putative cog3613, nucleoside 2-deoxyribosyltransferase protein. (161 aa)    
Predicted Functional Partners:
RSc0744
Putative dna/rna non-specific endonuclease protein.
       0.559
tauD
Putative alpha-ketoglutarate-dependent taurine dioxygenase oxidoreductase protein.
 
     0.506
RSc0794
Probable transmembrane protein.
  
     0.448
RSp0713
Putative gcn5-related n-acetyltransferase; protein.
  
     0.443
RSc0055
Signal peptide protein; Putative dienelactone hydrolase and related enzymes / esterase/lipase/thioesterase;lipase, active site; signal peptide protein.
  
     0.429
RSc2428
Probable amino acid-binding periplasmic (pbp) abc transporter protein.
  
     0.422
RSp0706
Probable amino-acid composite atp-binding transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
  
     0.410
RSc3093
Putative carboxypeptidase g2 precursor (folate hydrolase g2) transmembrane protein.
  
     0.403
RSp1470
Putative transcription regulator protein.
  
     0.402
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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