STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tauDPutative alpha-ketoglutarate-dependent taurine dioxygenase oxidoreductase protein. (301 aa)    
Predicted Functional Partners:
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.720
RSp1509
Putative periplasmic substrate-binding transmembrane protein.
 
  
 0.695
RSc1806
Probable polyketide synthase protein.
  
  
 0.684
RSp1422
Putative peptide synthetase protein.
  
  
 0.665
RSp0642
Probable non ribosomal peptide synthetase protein.
 
  
 0.638
RSp1508
Probable transmembranee abc transporter protein.
 
  
 0.638
RSc1811
Putative siderophore synthetase protein.
  
  
 0.595
RSc0745
Putative cog3613, nucleoside 2-deoxyribosyltransferase protein.
 
     0.506
RSp0317
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.498
ssuA2
Putative alkanesulfonates binding protein precursor.
 
  
 0.483
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.