STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcdHProbable glutaryl-coa dehydrogenase oxidoreductase protein. (435 aa)    
Predicted Functional Partners:
paaF
Putative enoyl-coa hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.954
RSc0475
Putative acetyl-coa acyltransferase protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.941
pacF
Probable beta-ketoadipyl coa thiolase protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.941
RSc0304
Probable enoyl-coa hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.938
RSp0671
Putative enoyl coa-hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.938
RSp0036
Probable acyl-coa dehydrogenase oxidoreductase protein.
  
  
 
0.923
lpdA
Probable dihydrolipoamide dehydrogenase (e3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) protein.
  
 0.922
RSc0274
Probable acyl coa dehydrogenase oxidoreductase protein.
  
  
 
0.917
RSc2020
Probable acyl-coa dehydrogenase oxidoreductase protein.
 
  
 
0.911
sucB
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
   
 0.909
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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