STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0757Putative transcription regulator protein. (273 aa)    
Predicted Functional Partners:
RSc0302
Probable transcription regulator protein.
  
     0.751
RSp0704
Probable transcription regulator protein.
  
     0.717
RSc0300
Probable transcription regulator protein.
  
     0.615
gcdH
Probable glutaryl-coa dehydrogenase oxidoreductase protein.
       0.572
RSc1610
Probable transcription regulator protein.
  
     0.571
RSc2171
Putative allophanate hydrolase subunit 1 protein.
  
    0.487
RSp0939
Probable cog2049, allophanate hydrolase subunit 1 protein.
  
    0.487
RSc2170
Putative allophanate hydrolase subunit 2 protein.
  
    0.478
RSp0938
Probable cog1984, allophanate hydrolase subunit 2 protein.
  
    0.478
pcaH
Probable protocatechuate 3,4-dioxygenase (beta chain) oxidoreductase protein.
 
   
 0.452
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.