STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cfa2Putative cyclopropane-fatty-acyl-phospholipid synthase protein. (406 aa)    
Predicted Functional Partners:
RSc0765
Hypothetical protein of unknown function duf72.
       0.773
RSp0367
Putative acyl-coenzyme a synthetases/amp-(fatty) acid ligases and c 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase.
  
  
 0.766
paaK
Probable phenylacetyl-coa-ligase protein; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
     
 0.762
paaC
Probable phenylacetic acid degradation protein.
      
 0.531
RSp0641
Probable non ribosomal peptide synthetase protein.
    
 0.529
RSc1806
Probable polyketide synthase protein.
  
  
 0.516
RSp1422
Putative peptide synthetase protein.
    
 0.503
RSc1811
Putative siderophore synthetase protein.
     
 0.494
pdxH1
Probable pyridoxamine 5'-phosphate oxidase (pnp/pmp oxidase) oxidoreductase protein; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
  
    0.492
RSc1810
Probable polyketide synthase protein.
  
  
 0.453
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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