STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc0770Putative transmembrane dehydrogenase (small subunit) oxidoreductase protein. (163 aa)    
Predicted Functional Partners:
RSc0771
Putative transmembrane dehydrogenase (large subunit) oxidoreductase protein.
   
 
 0.972
RSc0772
Putative oxidoreductase dehydrogenase (cytochrome c subunit) signal peptide protein.
   
   0.972
RSp0989
Putative cytochrome c, monohaem transmembrane protein.
   
   0.816
RSp0904
Putative choline dehydrogenase and related flavoproteins oxidoreductase.
   
 
 0.598
RSp1167
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
   
 
 0.598
RSc0123
Putative choline dehydrogenase and related flavoproteins oxidoreductase.
   
   0.490
betA
Putative choline dehydrogenase lipoprotein oxidoreductase.
   
   0.490
coxB
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
   0.411
RSc1279
Probable cytochrome c oxidase (subunit III) transmembrane protein; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
   0.411
RSc3154
Probable signal peptide protein.
   
   0.411
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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