STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RSc0771Putative transmembrane dehydrogenase (large subunit) oxidoreductase protein. (539 aa)    
Predicted Functional Partners:
RSc0772
Putative oxidoreductase dehydrogenase (cytochrome c subunit) signal peptide protein.
 
 0.991
RSc0770
Putative transmembrane dehydrogenase (small subunit) oxidoreductase protein.
   
 
 0.972
RSp0824
Putative gluconolactonase (d-glucono-delta-lactone lactonohydrolase) protein.
   
 
 0.910
RSp0989
Putative cytochrome c, monohaem transmembrane protein.
 
 
 0.867
pgi
Probable glucose-6-phosphate isomerase (gpi) (phosphoglucoseisomerase) (pgi) (phosphohexose isomerase) (phi). transmembrane protein.
   
 
  0.813
gapA
Probable glyceraldehyde-3-phosphate dehydrogenase (gapdh). oxidoreductase protein; Catalyzes the oxidative phosphorylation of glyceraldehyde 3- phosphate (G3P) to 1,3-bisphosphoglycerate (BPG) using the cofactor NAD. The first reaction step involves the formation of a hemiacetal intermediate between G3P and a cysteine residue, and this hemiacetal intermediate is then oxidized to a thioester, with concomitant reduction of NAD to NADH. The reduced NADH is then exchanged with the second NAD, and the thioester is attacked by a nucleophilic inorganic phosphate to produce BPG.
     
 0.809
glk
Probable glucokinase (glucose kinase) protein; Belongs to the bacterial glucokinase family.
     
 0.809
aceE
Probable pyruvate dehydrogenase e1 component oxidoreductase protein; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
     
 0.807
pykA1
Probable pyruvate kinase II protein; Belongs to the pyruvate kinase family.
   
 
 0.806
pykA2
Probable pyruvate kinase II protein; Belongs to the pyruvate kinase family.
   
 
 0.806
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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