STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asmAPutative involved in outer membrane biogenesis transmembrane protein. (740 aa)    
Predicted Functional Partners:
fliJ
Probable flagellar protein.
  
     0.583
RSc0774
TRNA threonylcarbamoyladenosine dehydratase; Putative dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis family 1 transmembrane protein.
       0.545
RSc0805
Hypothetical major facilitator transporter protein.
  
     0.527
flhC
Probable flagellar transcriptional activator transcription regulator protein; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family.
  
     0.520
RSc0899
Putative outer membrane lipoprotein transmembrane.
  
    0.512
RSc0023
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.507
flhD
Probable transcriptional activator flhd. transcription regulator protein; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family.
  
     0.507
RSp1175
Hypothetical protein of unknown function duf1458.
   
    0.493
RSp0134
Probable transmembrane protein.
  
    0.470
RSc3028
Putative signal peptide protein.
  
     0.464
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.