STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadD2Probable long-chain-fatty-acid--coa ligase protein. (568 aa)    
Predicted Functional Partners:
RSp0641
Probable non ribosomal peptide synthetase protein.
  
0.929
RSp1434
Putative acyl-coa synthetases(amp-forming) protein.
 
    
0.927
RSc1564
Putative phospholipid/glycerol acyltransferase transmembrane protein.
  
 
 0.909
RSc1810
Probable polyketide synthase protein.
 
 0.762
RSp1422
Putative peptide synthetase protein.
 
 
0.733
RSc1806
Probable polyketide synthase protein.
  
0.711
rplF
Probable 50s ribosomal subunit protein l6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.637
RSc2020
Probable acyl-coa dehydrogenase oxidoreductase protein.
 
  0.619
RSc0474
Putative 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
 
 
 0.610
RSc1762
Probable acyl-coa dehydrogenase oxidoreductase protein.
 
 
  0.598
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.