STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0794Probable transmembrane protein. (161 aa)    
Predicted Functional Partners:
RSc0793
Probable transmembrane protein.
 
  
 0.990
RSc3088
Putative signal peptide protein.
 
  
 0.944
RSc2963
Hypothetical uncharacterized protein upf0065; Miscellaneous; hypothetical/global homology.
 
  
 0.940
RSc0305
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.601
RSc0792
Putative lipase chaperone protein.
       0.586
RSp0331
Putative transcription regulator protein.
 
     0.586
RSp0185
Putative transcription regulator protein.
 
     0.549
RSc0795
Probable transmembrane protein.
 
     0.538
RSc1253
Putative polysaccharide deacetylase; signal peptide protein.
  
     0.536
addB
Probable homologous recombinational repair protein.
  
     0.459
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.