STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0795Probable transmembrane protein. (150 aa)    
Predicted Functional Partners:
RSc0796
Putative acyl-coa transferases/carnitine dehydratase transmembrane protein; Belongs to the CoA-transferase III family.
       0.675
RSc0794
Probable transmembrane protein.
 
     0.538
alaS
Probable alanyl-trna synthetase (alanine--trna ligase) (alars) protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.466
RSc2814
Putative prolyl 4-hydroxylase alpha subunit homologue oxidoreductase protein.
 
     0.439
RSc0793
Probable transmembrane protein.
       0.436
RSc1074
Probable signal peptide protein.
  
     0.436
ragC
Probable outer membrane lipoprotein.
  
     0.436
RSc3137
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.432
ragA
Probable polysaccharide transport system component signal peptide protein.
  
     0.431
rseA
Putative transmembrane sigma-e factor negative regulatory transcription regulator protein.
  
     0.419
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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