STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RSc0796Putative acyl-coa transferases/carnitine dehydratase transmembrane protein; Belongs to the CoA-transferase III family. (420 aa)    
Predicted Functional Partners:
gcdH
Probable glutaryl-coa dehydrogenase oxidoreductase protein.
 
 0.947
gabD1
Probable succinate-semialdehyde dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family.
    
  0.902
gabD2
Probable succinate-semialdehyde dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family.
    
  0.902
sucB
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
     
 0.901
RSc0795
Probable transmembrane protein.
       0.675
alaS
Probable alanyl-trna synthetase (alanine--trna ligase) (alars) protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.527
trpD2
Probable anthranilate phosphoribosyltransferase 2 protein; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
 
      0.479
RSc0793
Probable transmembrane protein.
  
    0.468
RSc0794
Probable transmembrane protein.
  
    0.441
ilvG
Putative acetolactate synthase isozyme II (large subunit) protein; Belongs to the TPP enzyme family.
 
 
 0.441
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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