STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0806Putative aldolase protein. (261 aa)    
Predicted Functional Partners:
RSc0807
Putative tautomerase (4-oxalocrotonate tautomerase) protein.
     
 0.764
RSc1999
Putative citrate lyase beta subunit protein; Belongs to the HpcH/HpaI aldolase family.
   
  
 0.710
ltaA
Probable low specificity l-threonine aldolase protein; Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde.
     
 0.606
RSc0805
Hypothetical major facilitator transporter protein.
   
   0.572
RSc0809
Putative hydrolase protein.
   
   0.565
fruA
Probable pts system, fructose-specific IIbc component (eIIbc-fru) (fructose-permease IIbc component) transmembrane protein.
   
  
 0.475
dalK
Putative d-arabinitol kinase protein.
  
  
 0.472
sirA
Probable redox protein, regulator of disulfide bond formation; Belongs to the sulfur carrier protein TusA family.
       0.464
RSp0641
Probable non ribosomal peptide synthetase protein.
 
   
 0.444
RSc0804
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
       0.401
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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