STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
popP2Type III effector protein popp2. (488 aa)    
Predicted Functional Partners:
avrA
Type III effector protein avra.
      
 0.830
RSp0081
Putative gcn5-related n-acetyltransferase protein.
      
 0.830
fliC
Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.646
ripG
Type III effector protein gala6.
      
 0.635
ripB
Type III effector ripb protein.
      
 0.632
RSp0842
Putative leucine-rich-repeat type III effector protein.
      
 0.566
RSc3272
Putative type III effector protein.
      
 0.547
RSp0216
Putative type III effector protein (serine/threonine-protein kinase).
      
 0.547
brg11
Probable avrbs3 family type III effector protein; Exported into plant cells, where it is targeted to the nucleus and probably acts as a transcription factor. Binds DNA in a sequence-specific manner. May contribute to plant pathogenicity. Belongs to the transcription activator-like effector (TALE) family. RipTAL/RTL subfamily.
      
 0.542
ripA
Type III effector protein awr1.
      
 0.542
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.