STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
popP2Type III effector protein popp2. (488 aa)    
Predicted Functional Partners:
avrA
Type III effector protein avra.
      
 0.783
ripG
Type III effector protein gala6.
      
 0.731
fliC
Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.642
RSp0842
Putative leucine-rich-repeat type III effector protein.
      
 0.553
RSc3272
Putative type III effector protein.
      
 0.530
RSp0216
Putative type III effector protein (serine/threonine-protein kinase).
      
 0.530
ripB
Type III effector ripb protein.
      
 0.523
ripA
Type III effector protein awr1.
      
 0.497
RSc0867
Putative hns-like transcription regulator protein.
       0.453
ripT
Type III effector protein ript.
      
 0.410
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.