STRINGSTRING
popP2 protein (Ralstonia solanacearum GMI1000) - STRING interaction network
"popP2" - Type III effector protein popp2 in Ralstonia solanacearum GMI1000
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
popP2Type III effector protein popp2; Miscellaneous; virulence (488 aa)    
Predicted Functional Partners:
avrA
Type III effector protein avra; Miscellaneous; virulence (230 aa)
           
  0.725
fliC
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella (273 aa)
           
  0.673
fliM
Probable flagellar motor switch protein flim; Cell processes; mobility chemotaxis (335 aa)
           
  0.671
RSp0216
Putative type III effector protein (Serine/threonine-protein kinase); Miscellaneous; virulence (577 aa)
           
  0.617
ripG
Type III effector protein gala6; Miscellaneous; virulence (620 aa)
           
  0.614
RSc3272
Putative type III effector protein; Miscellaneous; virulence (154 aa)
           
  0.579
RSc1349
Putative type III effector protein; Miscellaneous; virulence (685 aa)
           
  0.579
RSc0867
Putative hns-like transcription regulator protein; Miscellaneous; not classified regulator (96 aa)
              0.479
RSc0055
Signal peptide protein; Small molecule metabolism (325 aa)
           
  0.445
RSc0492
Putative dna binding transmembrane protein; Miscellaneous; hypothetical/global homology (251 aa)
           
  0.430
Your Current Organism:
Ralstonia solanacearum GMI1000
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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