STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0883Putative lysozyme (endolysin) protein. (153 aa)    
Predicted Functional Partners:
RSc0873
Putative bacteriophage-related transmembrane protein.
 
     0.870
RSc0882
Putative transmembrane protein.
       0.783
RSc0881
Probable transmembrane protein.
       0.782
RSc0884
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.773
RSc0875
Putative curculin-like (mannose-binding) lectin protein.
  
    0.598
RSc0878
Probable bacteriophage-related protein.
       0.590
RSc0874
Probable transmembrane protein.
       0.589
RSc0877
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.585
RSc0876
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.584
RSc0879
Probable transmembrane protein.
       0.584
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.