STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0896Putative transmembrane protein. (1261 aa)    
Predicted Functional Partners:
flgE
Probable flagellar hook protein flge.
   
 
 0.668
flgC
Probable flagellar basal-body rod protein flgc; Belongs to the flagella basal body rod proteins family.
   
   0.584
RSc1413
Probable outer membrane chaperone, skp-related transmembrane protein; Belongs to the skp family.
 
 
 0.554
RSc0897
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
    0.533
ubiG
Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
     
 0.529
RSc0316
Putative cog3218, abc-type uncharacterized transport system, auxiliary component abc transporter protein.
  
 
   0.486
RSp1511
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
    0.482
flgG
Probable flagellar basal-body rod protein flgg (distal rod protein).
   
   0.474
glpR
Probable glycerol-3-phosphate regulon repressor transcription regulator protein.
   
  
 0.467
RSc0899
Putative outer membrane lipoprotein transmembrane.
  
  
 0.447
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.