STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0919Putative deacetylase protein. (307 aa)    
Predicted Functional Partners:
RSc3358
Putative set domain protein; Miscellaneous; hypothetical/global homology.
 
 0.768
RSc1961
Putative aaa atpase; protein.
   
 0.755
RSc3151
Putative tryptophan 2-monooxygenase oxidoreductase protein.
   
 0.735
RSp0081
Putative gcn5-related n-acetyltransferase protein.
 
     0.735
RSp0431
Putative amine oxidase; oxidoreductase protein.
   
 0.735
gapA
Probable glyceraldehyde-3-phosphate dehydrogenase (gapdh). oxidoreductase protein; Catalyzes the oxidative phosphorylation of glyceraldehyde 3- phosphate (G3P) to 1,3-bisphosphoglycerate (BPG) using the cofactor NAD. The first reaction step involves the formation of a hemiacetal intermediate between G3P and a cysteine residue, and this hemiacetal intermediate is then oxidized to a thioester, with concomitant reduction of NAD to NADH. The reduced NADH is then exchanged with the second NAD, and the thioester is attacked by a nucleophilic inorganic phosphate to produce BPG.
 
  
 0.710
cobB-2
Putative nad-dependent protein deacetylase; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form; Belongs to the sirtuin family. Class III subfamily.
    
 
 0.619
htpG
Probable chaperone protein htpg (heat shock protein htpg) (high temperatureprotein g); Molecular chaperone. Has ATPase activity.
    
 0.603
RSc3436
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
    
 0.603
mltB
Putative membrane-bound lytic murein transglycosylase b protein.
       0.562
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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