STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0922Lipoprotein; Probable abc-type metal ion transport system, periplasmic component/surface antigen abc transporter protein; Belongs to the nlpA lipoprotein family. (266 aa)    
Predicted Functional Partners:
RSc0921
Probable transmembrane abc transporter protein.
 0.999
metN
Probable atp-binding abc transporter protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.997
RSc3386
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
  
 
0.902
metY
Probable o-acetylhomoserine (thiol)-lyase (methionine/homocysteine synthase) protein.
  
    0.489
RSc3415
Miscellaneous; hypothetical/partial homology.
  
    0.489
RSp1583
Probable o-acetylhomoserine sulfhydrylase transmembrane protein.
  
    0.489
etfB
Probable electron transfer flavoprotein (beta-subunit).
       0.456
metK
S-adenosylmethionine synthetase (methionineadenosyltransferase) (adomet synthetase) (mat) protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
  
 0.418
RSc0919
Putative deacetylase protein.
       0.413
RSc2516
Osmoprotectant transport system permease protein; Putative abc type transporter : periplasmic glycine betaine / choline-binding lipoprotein and permease components transmembrane.
 
  
 0.409
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.