STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadAProbable d-amino acid dehydrogenase 1 small subunit. signal peptide protein; Oxidative deamination of D-amino acids. (429 aa)    
Predicted Functional Partners:
dadA2
Probable d-amino acid dehydrogenase 2 small subunit. oxidoreductase protein; Oxidative deamination of D-amino acids.
  
  
 
0.912
RSp1400
Probable 4-hydroxyphenylpyruvate dioxygenase-related protein.
   
 
 0.909
hpd
Probable 4-hydroxyphenylpyruvate dioxygenase oxidoreductase protein.
   
 
 0.905
RSp1316
Probable 4-hydroxyphenylpyruvate dioxygenase oxidoreductase protein.
   
 
 0.905
tyrB
Probable aromatic-amino-acid aminotransferase protein.
     
 0.903
RSp0714
Putative d-alanine aminotransferase (d-aspartate aminotransferase) protein.
     
 0.903
hisC2
Probable histidinol-phosphate aminotransferase 2 (imidazoleacetol-phosphate transaminase 2) protein; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
  0.900
aspC
Probable aspartate aminotransferase protein.
     
  0.900
hisC1
Probable histidinol-phosphate aminotransferase 1 (imidazoleacetol-phosphate transaminase 1) protein; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
  0.900
aatA2
Probable aspartate aminotransferase a protein.
     
  0.900
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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