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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc0997Putative cog1670, acetyltransferase protein. (202 aa)    
Predicted Functional Partners:
RSc3120
Putative flavin-nucleotide-binding protein.
      0.913
RSc0998
Putative aaa atpase protein.
       0.768
RSc0996
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.766
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
 
    0.660
RSp0689
Probable negative transcriptional regulator transcription regulator protein.
 
     0.585
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.522
RSp1422
Putative peptide synthetase protein.
  
  
 0.508
rnc
Probable ribonuclease III (rnase III) protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.499
RSc0999
Putative periplasmic cytochrome type-c oxidoreductase signal peptide protein.
       0.498
RSc1806
Probable polyketide synthase protein.
  
  
 0.498
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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