STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1000Putative periplasmic cytochrome type-c oxidoreductase signal peptide protein. (133 aa)    
Predicted Functional Partners:
RSc0999
Putative periplasmic cytochrome type-c oxidoreductase signal peptide protein.
  
 0.995
RSc3084
Probable transmembrane protein.
 
 
 
 0.727
RSc0370
Probable transmembrane protein.
 
   
 0.715
ftsL
Probable cell division ftsl transmembrane protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.673
petC
Putative cytochrome c1 precursor transmembrane protein.
 
 
 0.670
ctaA
Putative heme o oxygenase (cytochrome aa3-controlling) transmembrane protein.
 
   
 0.645
RSc0368
Probable transmembrane protein.
  
     0.592
RSc1277
Probable cytochrome c oxidase (subunit II) transmembrane protein.
  
 
 0.581
RSp0992
Probable signal peptide protein.
  
 
 0.581
RSp0029
Putative hns-like transcription regulator protein.
  
     0.574
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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