Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RSc0610 | RSc1006 | RSc0610 | RSc1006 | Putative signal peptide protein. | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.808 |
| RSc0610 | nth | RSc0610 | RSc1005 | Putative signal peptide protein. | Probable endonuclease III protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.542 |
| RSc1006 | RSc0610 | RSc1006 | RSc0610 | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Putative signal peptide protein. | 0.808 |
| RSc1006 | RSc1007 | RSc1006 | RSc1007 | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Probable transcription regulator protein. | 0.528 |
| RSc1006 | RSc2373 | RSc1006 | RSc2373 | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Probable formate dehydrogenase (large subunit) oxidoreductase protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.715 |
| RSc1006 | RSc2987 | RSc1006 | RSc2987 | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Probable oxidoreductase cytochrome c-type signal peptide protein. | 0.457 |
| RSc1006 | RSp0720 | RSc1006 | RSp0720 | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Probable signal peptide protein. | 0.808 |
| RSc1006 | bamE | RSc1006 | RSc2746 | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Putative ipr007450 small a (tmrna-binding)-related protein transmembrane; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.618 |
| RSc1006 | nth | RSc1006 | RSc1005 | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Probable endonuclease III protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.860 |
| RSc1006 | nuoE | RSc1006 | RSc2058 | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Probable nadh dehydrogenaseI(chain e) oxidoreductase protein. | 0.512 |
| RSc1006 | recX | RSc1006 | RSc0552 | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Putative regulatory protein recx; Modulates RecA activity.; Belongs to the RecX family. | 0.510 |
| RSc1006 | sspB | RSc1006 | RSc2925 | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Putative stringent starvation protein b. | 0.634 |
| RSc1007 | RSc1006 | RSc1007 | RSc1006 | Probable transcription regulator protein. | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.528 |
| RSc1007 | nth | RSc1007 | RSc1005 | Probable transcription regulator protein. | Probable endonuclease III protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.480 |
| RSc2373 | RSc1006 | RSc2373 | RSc1006 | Probable formate dehydrogenase (large subunit) oxidoreductase protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.715 |
| RSc2373 | nuoE | RSc2373 | RSc2058 | Probable formate dehydrogenase (large subunit) oxidoreductase protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Probable nadh dehydrogenaseI(chain e) oxidoreductase protein. | 0.933 |
| RSc2987 | RSc1006 | RSc2987 | RSc1006 | Probable oxidoreductase cytochrome c-type signal peptide protein. | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.457 |
| RSc2987 | sspB | RSc2987 | RSc2925 | Probable oxidoreductase cytochrome c-type signal peptide protein. | Putative stringent starvation protein b. | 0.403 |
| RSp0720 | RSc1006 | RSp0720 | RSc1006 | Probable signal peptide protein. | Probable ferredoxin [4fe-4s] protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.808 |
| RSp0720 | nth | RSp0720 | RSc1005 | Probable signal peptide protein. | Probable endonuclease III protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.542 |
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