STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaZProbable poly[d(-)-3-hydroxybutyrate] depolymerase protein. (422 aa)    
Predicted Functional Partners:
phbC
Probable poly-beta-hydroxybutyrate polymerase transmembrane protein.
 
  
 0.991
RSc1334
Probable d--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; Participates in the degradation of poly-3-hydroxybutyrate (PHB). It works downstream of poly(3-hydroxybutyrate) depolymerase, hydrolyzing D(-)-3-hydroxybutyrate oligomers of various length (3HB- oligomers) into 3HB-monomers; Belongs to the D-(-)-3-hydroxybutyrate oligomer hydrolase family.
     
 0.901
phaP2
Probable polyhydroxybutyrate granule-associated protein (phasin) phap2.
      
 0.785
phbB
Probable acetoacetyl-coa reductase oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   
 0.674
RSc1634
Putative pha accumulation regulator dna-binding protein.
 
   
 0.646
phbA
Probable acetyl-coa acetyltransferase (acetoacetyl-coa thiolase) protein; Belongs to the thiolase-like superfamily. Thiolase family.
      
 0.567
RSp1481
Probable transmembrane protein.
  
     0.470
RSc1572
Probable d-beta-hydroxybutyrate dehydrogenase (bdh) oxidoreductase protein.
  
   
 0.461
RSc2551
Putative predicted esterase of the alpha-beta hydrolase superfamily protein.
  
     0.435
tISRso1-2
Isrso1-transposase protein.
       0.429
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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