STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1012Putative site-specific recombinase transmembrane protein. (696 aa)    
Predicted Functional Partners:
RSc0317
Probable transmembrane protein.
 
     0.714
RSp0610
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.649
RSc1737
Putative transmembrane outer membrane porin signal peptide protein.
  
     0.639
argS
Probable arginyl-trna synthetase (arginine--trna ligase) (argrs) protein.
   
    0.543
RSc1084
Probable outer membrane p2; transmembrane protein.
  
     0.533
RSp1594
Probable porin signal peptide protein.
  
     0.491
RSc2760
Probable ipr001702 outer membrane (porin) signal peptide protein.
  
     0.478
RSp0116
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.474
RSp0337
Probable porin precursor transmembrane protein.
  
     0.470
uvrB
Probable uvrabc system protein b (uvrb protein) (excinuclease abc subunit b); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. [...]
       0.469
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.