STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsKPutative ribokinase protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (315 aa)    
Predicted Functional Partners:
rpiA
Probable ribose-5-phosphate isomerase a (phosphoriboisomerase a)(pri) protein; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
   
 0.973
tktA
Probable transketolase protein; Belongs to the transketolase family.
  
 0.926
RSc0202
Probable ribose-phosphate pyrophosphokinase protein; Belongs to the ribose-phosphate pyrophosphokinase family.
   
 0.924
prsA
Probable ribose-phosphate pyrophosphokinase protein; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
   
 0.924
RSc0691
Putative phosphomannomutase or phosphoglucomutase protein.
  
 
 0.907
RSc1014
Probable transcriptional regulatory dna-binding repressor transcription regulator protein.
  
 0.884
RSc1015
Probable ribose abc transporter, permease abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.875
RSc1017
Probable ribose abc transporter, periplasmic ribose-binding abc transporter protein.
 
  
 0.869
RSc1016
Probable ribose abc transporter, atp-binding abc transporter protein.
 
  
 0.799
rfaE
Probable adp-heptose synthase protein.
      
 0.783
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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