STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1014Probable transcriptional regulatory dna-binding repressor transcription regulator protein. (347 aa)    
Predicted Functional Partners:
rbsK
Putative ribokinase protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.884
RSc1015
Probable ribose abc transporter, permease abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.866
fruB
Probable multiphosphoryl transfer protein mtp.
 
 
 
 0.855
RSc1017
Probable ribose abc transporter, periplasmic ribose-binding abc transporter protein.
 
  
 0.852
RSp1282
Probable pts system, fructose-specific eIIa/hpr/ei components protein.
   
 
 0.824
RSc1016
Probable ribose abc transporter, atp-binding abc transporter protein.
 
  
 0.802
RSp1422
Putative peptide synthetase protein.
    
 
 0.786
gltB
Probable glutamate synthase (large subunit) oxidoreductase protein.
    
 
 0.731
scrK
Probable fructokinase protein.
 
  
 0.574
fruA
Probable pts system, fructose-specific IIbc component (eIIbc-fru) (fructose-permease IIbc component) transmembrane protein.
 
   
 0.564
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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