STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1029Probable short-chain alcohol dehydrogenase oxidoreductase protein. (246 aa)    
Predicted Functional Partners:
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.749
lysS
Putative lysyl-trna synthetase (lysine--trna ligase) (lysrs) protein; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
   0.726
prfB
Probable peptide chain release factor 2 (rf-2) protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.711
RSp1422
Putative peptide synthetase protein.
  
 
 0.613
fabD
Probable malonyl coa-[acyl-carrier-protein] transacylase.
 
 
 0.404
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.