STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1045Putative of unknown function upf0011; transmembrane protein. (243 aa)    
Predicted Functional Partners:
RSc1046
Probable maf-like protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes 7- methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids; Belongs to the Maf family. YceF subfamily.
  
    0.832
RSc1401
Miscellaneous; hypothetical/partial homology; Belongs to the pseudouridine synthase RsuA family.
 
     0.584
RSp0498
Putative methyltransferase protein.
  
  
 0.522
RSc1047
Probable protein of unknown function duf177.
       0.520
RSc1419
Probable trna/rrna methyltransferase protein.
 
   
 0.519
dnaA
Probable chromosomal replication initiator protein dnaa; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
 
    0.510
metG1
Probable methionyl-trna synthetase (methionine--trna ligase)(metrs) protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.501
prmA
Probable ribosomal protein l11 methyltransferase (l11 mtase); Methylates ribosomal protein L11.; Belongs to the methyltransferase superfamily. PrmA family.
 
  
 0.496
rpmF
Probable 550s ribosomal protein l32; Belongs to the bacterial ribosomal protein bL32 family.
     
 0.490
holB
Probable dna polymerase III (delta' subunit) protein.
 
    0.480
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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