Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RSc1047 | infC | RSc1047 | RSc1578 | Probable protein of unknown function duf177. | Probable translation initiation factor if-3 protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.879 |
| RSc1047 | rimM | RSc1047 | RSc0934 | Probable protein of unknown function duf177. | Probable 16s rrna processing protein rimm; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.; Belongs to the RimM family. | 0.877 |
| RSc1047 | rplA | RSc1047 | RSc3037 | Probable protein of unknown function duf177. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.889 |
| RSc1047 | rplK | RSc1047 | RSc3038 | Probable protein of unknown function duf177. | Probable 50s ribosomal subunit protein l11 (methylation rna-binding); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.899 |
| RSc1047 | rpmF | RSc1047 | RSc1048 | Probable protein of unknown function duf177. | Probable 550s ribosomal protein l32; Belongs to the bacterial ribosomal protein bL32 family. | 0.963 |
| RSc1047 | rpsB | RSc1047 | RSc1404 | Probable protein of unknown function duf177. | Probable 30s ribosomal protein s2; Belongs to the universal ribosomal protein uS2 family. | 0.883 |
| RSc1047 | rpsC | RSc1047 | RSc3013 | Probable protein of unknown function duf177. | Probable 30s ribosomal protein s3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.; Belongs to the universal ribosomal protein uS3 family. | 0.943 |
| RSc1047 | rpsF | RSc1047 | RSc1307 | Probable protein of unknown function duf177. | Probable 30s ribosomal protein s6; Binds together with S18 to 16S ribosomal RNA. | 0.886 |
| RSc1047 | rpsP | RSc1047 | RSc0933 | Probable protein of unknown function duf177. | Probable 30s ribosomal protein s16; Belongs to the bacterial ribosomal protein bS16 family. | 0.883 |
| RSc1047 | trmD | RSc1047 | RSc0935 | Probable protein of unknown function duf177. | tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.879 |
| infC | RSc1047 | RSc1578 | RSc1047 | Probable translation initiation factor if-3 protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Probable protein of unknown function duf177. | 0.879 |
| infC | rimM | RSc1578 | RSc0934 | Probable translation initiation factor if-3 protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Probable 16s rrna processing protein rimm; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.; Belongs to the RimM family. | 0.562 |
| infC | rplA | RSc1578 | RSc3037 | Probable translation initiation factor if-3 protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.942 |
| infC | rplK | RSc1578 | RSc3038 | Probable translation initiation factor if-3 protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Probable 50s ribosomal subunit protein l11 (methylation rna-binding); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.936 |
| infC | rpmF | RSc1578 | RSc1048 | Probable translation initiation factor if-3 protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Probable 550s ribosomal protein l32; Belongs to the bacterial ribosomal protein bL32 family. | 0.917 |
| infC | rpsB | RSc1578 | RSc1404 | Probable translation initiation factor if-3 protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Probable 30s ribosomal protein s2; Belongs to the universal ribosomal protein uS2 family. | 0.976 |
| infC | rpsC | RSc1578 | RSc3013 | Probable translation initiation factor if-3 protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Probable 30s ribosomal protein s3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.; Belongs to the universal ribosomal protein uS3 family. | 0.975 |
| infC | rpsF | RSc1578 | RSc1307 | Probable translation initiation factor if-3 protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Probable 30s ribosomal protein s6; Binds together with S18 to 16S ribosomal RNA. | 0.970 |
| infC | rpsP | RSc1578 | RSc0933 | Probable translation initiation factor if-3 protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Probable 30s ribosomal protein s16; Belongs to the bacterial ribosomal protein bS16 family. | 0.952 |
| infC | trmD | RSc1578 | RSc0935 | Probable translation initiation factor if-3 protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.619 |
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