STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1062Probable transmembrane protein. (130 aa)    
Predicted Functional Partners:
rnc
Probable ribonuclease III (rnase III) protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.857
RSc1259
Putative signal peptide protein.
  
     0.775
pilI
Putative twitching motility protein.
  
     0.763
RSc0400
Putative gtpase (dynamin-related) harboring a t-snare domain protein.
  
     0.762
pilO
Probable fimbrial type-4 assembly membrane transmembrane protein.
  
   
 0.761
RSc2158
Putative protein phosphatase 2c-like.
 
     0.760
pilP
Probable fimbrial type-4 assembly lipoprotein.
  
   
 0.754
RSc2157
Putative serine/threonine protein kinase.
  
     0.752
era
Probable gtp-binding protein era homolog; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.750
RSc1986
Probable type iv pilus assembly fimv-related transmembrane protein.
  
     0.749
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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