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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1078Probable transcriptional regulatory dna-binding transcription regulator protein. (255 aa)    
Predicted Functional Partners:
RSc2114
Probable transcription regulator protein.
  
  
 0.681
gudD1
Probable glucarate dehydratase protein.
 
   
 0.662
RSp0233
Probable hydrolase transmembrane protein.
     0.625
exuT2
Putative hexuronate transporter transmembrane protein.
 
   
 0.612
RSc2117
Probable transcription regulator protein.
  
  
 0.574
RSp1506
Probable transcription regulator protein.
  
    0.574
RSc0302
Probable transcription regulator protein.
 
  
 0.553
lldP
Putative l-lactate permease transmembrane protein; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.542
RSc3411
Probable transcription regulator protein.
 
  
 0.527
RSc1997
Probable transcription regulator protein.
  
    0.492
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.