STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sda2aProbable inactivated l-serine amonya-lyase, l-serine dehydratase 2 (l-serine deaminase 2) protein. (61 aa)    
Predicted Functional Partners:
sda2b
Probable inactivated l-serine amonya-lyase, l-serine dehydratase 2 (l-serine deaminase 2) protein.
 
     0.942
soxA2
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
  
  
 0.767
soxB2
Probable sarcosine oxidase (beta subunit) oxidoreductase protein.
  
    0.732
soxD2
Probable sarcosine oxidase (delta subunit) oxidoreductase protein.
  
    0.700
soxG2
Probable sarcosine oxidase (gamma subunit) oxidoreductase protein.
  
  
 0.698
folB2
Putative dihydroneopterin aldolase protein.
       0.651
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
  
 0.638
ilvH
Probable acetolactate synthase isozyme III (small subunit) protein.
  
 
  0.579
thrC
Probable threonine synthase protein.
   
 
 0.534
ilvI
Probable acetolactate synthase isozyme III (large subunit) protein.
   
 
 0.526
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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