STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc1108Probable transcriptional regulatory dna-binding transcription regulator protein. (241 aa)    
Predicted Functional Partners:
RSc1813
Probable transcription regulator protein.
 
 
 0.765
RSc1107
Probable pseudogene (abc transporter n-terminal fragment) transmembrane protein.
       0.727
RSc0234
Probable transcription regulator protein.
 
 
 0.685
RSc1109
Probable pseudogene (dehydrogenase fragment) protein.
       0.634
RSp0686
Probable transcription regulator protein.
 
 
 0.575
RSp1247
Probable transcription regulator protein.
 
 
 0.567
soxA1
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
 
     0.555
soxA2
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
 
     0.554
soxD2
Probable sarcosine oxidase (delta subunit) oxidoreductase protein.
 
    0.491
soxD1
Probable sarcosine oxidase (delta subunit) oxidoreductase protein.
 
    0.485
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.